first thing: You should definitely filter the liquid many times before saturating with salt, it will make your life much easier later on.
As for the precipitation, are you sure the water was really saturated with salt? How much salt did you add?
I wouldnt use NaOH, its such a strong base, im not sure how stable harmalas are if the solution gets too basic.. Plus its unnecessarily risky to work with NaOH in terms of personal safety if you can perfectly work with sodium carbonate
Anyways, without exact measures one cannot know the pH you got there with your NaOH , so its hard to say what that is.. It could be just a bit of harmine precipitated, it could be all of harmine+harmaline, who knows.. maybe raising the pH could precipitate the rest, but I would use sodium carbonate instead
And to recover the precipitated harmalas you HAVE to use a filter as thin as a coffee filter otherwise they will pass through (in something like a cotton funnel).. Thats why you have to filter a few times in progressively finer filters before the first precipitation, so that most filter clogging stuff is gone before you really need to use the coffee filter...
So you can try to decant most if the precipitation is on the bottom, but at least the last bit you will have to filter (or, get rid of most liquid, redissolve precipitation in acidified liquid, filter many times, and then precipitate again with sodium carbonate)