Thanks for posting this, I think there is some really good information here. It's going to be hard to suss out anything definitive, but it really points in some good directions.
As for the oil being an oxide, IMO its a possibility. The smell seems consistent (tho I would describe it as floral and sweet, not so much pungent). If this is the case, I would be more inclined to consider the conversion of the amines to their oxides via the procedure, IE: an artifact of the extraction. I base this off of the reading of articles dealing with the oxides in extractions stating that they do form as artifacts.
As for the Zn reduction: as endless points out here, color alone is not a good indicator for anything other than *some* change has occurred. Without running at least TLC on the samples, it is almost impossible to say what this change is. You can run this reaction on MHRB with similar color changes, and this seems to be affecting the tannins in the extraction as they will precipitate out (heavily); but this is not due to DMT-oxide it is the reaction happening to another compound. Also from your paper:
To counter this, after Zn reduction, I perform 1 DCM defat, obviously checking the ph of the solution is low
enough.
While this would definitely help things to crystallize, it throws another variable into the mix that complicates things. My thinking here is that by performing this step, you will not necessarily know if it was any oils in the material or the oil of the oxide that was preventing crystallization, you've effectively dealt with both at once. Side by side comparisons of the same material would lend more evidence to one or the other possibilities. That is, do one with only the reduction, do one with only the defat, and one that incorporates both. Then compare results.
Thus, I feel the Zn reduction here is inconclusive.
As for the yellow oil being a plant oil: Here again, IMO this is another possibility. The extraction procedure is a variation on STB with no de-fats. Any oils will therefore end up in the final NPS extraction. You state that you tested the presence of oils through de-fats with heavy petroleum distillates and yielded no appreciable amounts. Did you try this with DCM? From my experience, extractions with only naptha (light petroleum) were almost always oily. I also noticed that it is not an efficient extraction solvent, often requiring > 6 defats or extractions to yield any material. I quit using it early on and looked for alternatives. That being said, this property makes it a great re-crystallization solvent. So, I would hypothesize that it is also a possibility that the oil could also be from the plant. Standard A/B extractions with CHCl3 doing 3 defats and 3 extractions will yield a powdery material if the extraction is handled carefully.
And lastly, your paper said (if I read it correctly) that you obtained 95 mg of alkaloids from 1200 g of material. That is a yield of ~.0075% If this is if fact correct, some exploration of the process needs looked into starting with the use of light/heavy petroleum as the nps. This seems very low to me, even for wild strains of P. arundinecea.
Some of the very good points gleaned from this: Boiling the material is a good way to deal with the chlorophyll. I need to get a wheat grass juicer =). And that extracting usable material from a plant with a low alkaloid content might be feasible.
The alkaloid exists in the plant as fb?
Your notes would seem to indicate this. This was always my understanding based on my early reading about extraction of alkaloids.
Thank you for sharing your information and please don't take my critique harshly, it's not meant that way. It is only meant for clarity and understanding.
Keep up the work, it gets Phalaris one step closer to being more well understood and a viable source of alkaloids.