Okay, let's step back for a second, I think you may be confused about freebase and salt forms.
The freebase form of an alkaloid is a form where the molecule is "by itself", so to speak. It will have a basic (that is, high) pH, not generally be water-soluble, and is obtained by basifying the mixture in this case. In the case of harmalas, it can be both smoked or used orally. If you mix it in an acidic environment, it will become a salt and dissolve.
In the salt form, the alkaloid molecule forms an ionic bond with an acid molecule. For example, in vinegar (containing acetic acid) it will form the acetate salt. The salt form is water soluble. In the case of harmalas, it can be used orally but not smoked. If you mix it in a basic environment (high pH), it will become a base, precipitate out of the water, and slowly fall to the bottom. In the case of harmalas, the water-soluble salt form can be extracted from the water through the manske step. Do not confuse the salt form of harmalas with table salt, NaCl.
With this information you should have no problem answering to your own question. But do ask if you have any doubts.