Yes warm naphtha pulls more inactives, but on the other hand, if not enough room temperature naphtha is used (or when it cools), then maybe some dmt will crash out together with the actives...
SWIM always makes 25ml warm naphtha per g of impure dmt, seems to work fine for him.
BTW, SWIM has noticed that cloudiness by itself is not a good indicator of saturation of naphtha.. It seems for some reason, specially when fast-evapping in front of a fan, that the naphtha gets cloudy quite soon after one leaves it to evap.. Then, after a while, it becomes transparent again, and only later it becomes cloudy and fully saturated. At least this happened to SWIM a few times. and since there is no problem of overdoing the 'pre-evap', SWIM would recommend leaving only small amounts of naphtha when putting in the freezer.
As for the cooling down slowly, the only advantage AFAIK, is to grow larger crystals (specially if one keeps alternating between freezer/fridge a few times before leaving in the freezer for long in the end), but purity wont be affected, I think, because whatever impurity is there, will be there anyways.