Ivan Illich
Esteemed member
Thanks! I appreciate the quick answer.
This is a quite a solid recurrent selection setup, Some things remain unclear to me however. A few follow-ups on what I think are some key things to point out/find out here:
How many plants enter each breeding cycle, and how many contribute pollen and seed, are these sampled?
Since the plant is self-incompatible and tetraploid you can't inbreed to fix traits, so a population size is really your main defense against losing traits. Removing the bottom 50% low producers each round is a good intensity, but population has to be kept high enough. Please note here!!!: If you keep 100 plants but only a handful end up as pollen donors (because a few produce copious pollen and dominate, or they produce ripe pollen first), your Ne is set by that handful, not by 100.
Have you tracked whether group means for metabolite are actually moving across cycles, or is the gain assumed? What measures have been taken to minimize the effect of environment on alkaloid content? This is to make sure that the effects you are seeing actually have a genetic foundation instead of an environmental one.
Since the metabolite profiles likely represent the final branches in the metabolic pathway, it is probably not very useful to separate your plants in these chemotype groups yet and just aim for higher total alkaloid content instead. As this represents the total flux capacity of the metabolic pathways that can produce these compounds. If the effective breeding population is sufficiently large, you will keep all these chemo types at the end of that ride, then you select from there. Even keeping gramine in might actually be good, that is if it is yet another tip of the fork of the N,N-DMT or 5-Meo-DMT biosynthesis pathway. However it is super promising to see that it can be selected out relatively quickly from a population! I'll see if I can dive into some literature to find out what the bio synthetic pathways look like for these compounds.
It makes sense that the lineages are unknown from your wild samples. However, have population level lineages been kept, as soon as you started breeding and crossing?
moreover:
- The amount of generations for example,
- which plants were taken for the next generation,
- how many plants were kept? (Although getting the actual pollinators would be amazing).
Basically anything that will help me see important aspects of the breeding process
Really looking forward to hearing what you guys think! It's been a while for me when I had to use good old breeding genetics, so if I made some errors, or you just have general disagreements, let me know!
Thanks a lot for initiating this wonderful project.
Much love
This is a quite a solid recurrent selection setup, Some things remain unclear to me however. A few follow-ups on what I think are some key things to point out/find out here:
How many plants enter each breeding cycle, and how many contribute pollen and seed, are these sampled?
Since the plant is self-incompatible and tetraploid you can't inbreed to fix traits, so a population size is really your main defense against losing traits. Removing the bottom 50% low producers each round is a good intensity, but population has to be kept high enough. Please note here!!!: If you keep 100 plants but only a handful end up as pollen donors (because a few produce copious pollen and dominate, or they produce ripe pollen first), your Ne is set by that handful, not by 100.
Have you tracked whether group means for metabolite are actually moving across cycles, or is the gain assumed? What measures have been taken to minimize the effect of environment on alkaloid content? This is to make sure that the effects you are seeing actually have a genetic foundation instead of an environmental one.
The selected plants are then grouped according to their chemotype profiles using the following classification:
Type 1: DMT-dominant
Type 2: DMT and 5-MeO-DMT
Type 3: 5-MeO-DMT and 5-MeO-NMT
Plants are subsequently cross-pollinated within their respective groups. Where, exceptional individuals may be used for introgression between groups to combine desirable traits.
Since the metabolite profiles likely represent the final branches in the metabolic pathway, it is probably not very useful to separate your plants in these chemotype groups yet and just aim for higher total alkaloid content instead. As this represents the total flux capacity of the metabolic pathways that can produce these compounds. If the effective breeding population is sufficiently large, you will keep all these chemo types at the end of that ride, then you select from there. Even keeping gramine in might actually be good, that is if it is yet another tip of the fork of the N,N-DMT or 5-Meo-DMT biosynthesis pathway. However it is super promising to see that it can be selected out relatively quickly from a population! I'll see if I can dive into some literature to find out what the bio synthetic pathways look like for these compounds.
It makes sense that the lineages are unknown from your wild samples. However, have population level lineages been kept, as soon as you started breeding and crossing?
moreover:
- The amount of generations for example,
- which plants were taken for the next generation,
- how many plants were kept? (Although getting the actual pollinators would be amazing).
Basically anything that will help me see important aspects of the breeding process

Really looking forward to hearing what you guys think! It's been a while for me when I had to use good old breeding genetics, so if I made some errors, or you just have general disagreements, let me know!
Thanks a lot for initiating this wonderful project.
Much love
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